It looks like there is something wrong with that label file (there
should not be 1.7 million lines). Check to see whether the first couple
of lines look similar to the other labels. it might be that mergelabels
is not quite doing the right thing.
doug
On 11/26/14 11:38 AM, Anna Jonsson wrote:
hi the full error message is
reading input surface /XXXXXXXXXX/surf/lh.pial...
reading input pial surface /XXXXXXXXXX/surf/lh.pial...
reading input white surface //XXXXXXXXX/surf/lh.white...
mris_anatomical_stats: could not parse 1697283th line '60529 -5.365
-17' in label file
subj: could not read label file (null)
On Mon, Nov 24, 2014 at 4:56 PM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote:
What is the full terminal output and error msg?
On 11/21/2014 04:14 AM, Anna Jonsson wrote:
> hi, I have tried to make prefrotnal cortex label by doing first
>
>
>
> mri_annotation2label --subject "$subject" --hemi rh --outdir
> "$subject"/label
>
>
>
> mri_mergelabels -i lh.caudalanteriorcingulate.label -i
> lh.caudalmiddlefrontal.label -i lh.lateralorbitofrontal.label -i
> lh.medialorbitofrontal.label -i lh.parsopercularis.label -i
> lh.parsorbitalis.label -i lh.parstriangularis.label -i
> lh.rostralanteriorcingulate.label -i
lh.rostralmiddlefrontal.label -i
> lh.superiorfrontal.label -i lh.lateralorbitofrontal.label -o
> lh.prefrontalcortex.label -d /directory/subject/label
>
>
> which does create a label called x.prefrontalcortex.label in each
> persons directory. then however when i try to do
>
> mris_anatomical_stats -l
> $SUBJECTS_DIR/"$subject"/label/lh.prefrontalcortex.label
"$subject" lh
> pial | grep "thickness" >> left_prefrontal
>
> i get error and say it cant find label. any pointers on what im
doing
> wrong?
>
> thank you
>
>
>
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
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