hi the full error message is reading input surface /XXXXXXXXXX/surf/lh.pial... reading input pial surface /XXXXXXXXXX/surf/lh.pial... reading input white surface //XXXXXXXXX/surf/lh.white... mris_anatomical_stats: could not parse 1697283th line '60529 -5.365 -17' in label file subj: could not read label file (null)
On Mon, Nov 24, 2014 at 4:56 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > What is the full terminal output and error msg? > > On 11/21/2014 04:14 AM, Anna Jonsson wrote: > > hi, I have tried to make prefrotnal cortex label by doing first > > > > > > > > mri_annotation2label --subject "$subject" --hemi rh --outdir > > "$subject"/label > > > > > > > > mri_mergelabels -i lh.caudalanteriorcingulate.label -i > > lh.caudalmiddlefrontal.label -i lh.lateralorbitofrontal.label -i > > lh.medialorbitofrontal.label -i lh.parsopercularis.label -i > > lh.parsorbitalis.label -i lh.parstriangularis.label -i > > lh.rostralanteriorcingulate.label -i lh.rostralmiddlefrontal.label -i > > lh.superiorfrontal.label -i lh.lateralorbitofrontal.label -o > > lh.prefrontalcortex.label -d /directory/subject/label > > > > > > which does create a label called x.prefrontalcortex.label in each > > persons directory. then however when i try to do > > > > mris_anatomical_stats -l > > $SUBJECTS_DIR/"$subject"/label/lh.prefrontalcortex.label "$subject" lh > > pial | grep "thickness" >> left_prefrontal > > > > i get error and say it cant find label. any pointers on what im doing > > wrong? > > > > thank you > > > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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