Hi Esha
what are you trying to do? From this output it looks like you are runing
a ~1000 time point longiutdinal study, which I assume is not what you
meant.
Please be sure to include the exact command you ran!
cheers
Bruce
On Wed, 6 Aug 2014,
Esha Mehta wrote:
Hello,
I am extremely new FreeSurfer user, and have hit a bump in the road while
trying to run -autorecon1 and -autorecon2. The process seemed to be running
smoothly until I got the following warning messages for every file number,
and then it was randomly killed-
* WARNING: TP 890 to 1 did not converge !!
* WARNING: TP 891 to 1 did not converge !!
* WARNING: TP 892 to 1 did not converge !!
mapping movs and creating initial template...
allow intensity scaling
Linux login4 2.6.32-431.5.1.el6.x86_64 #1 SMP Fri Jan 10 14:46:43 EST 2014
x86_64 x86_64 x86_64 GNU/Linux
recon-all -s DNS_highRes_N892 exited with ERRORS at Mon Jul 21 10:48:23 EDT
2014
Within the error log, there was also an extremely lengthy command, and I
believe could have been part of the issue as well. It is way to long to post
here, but here is how it begins and ends-
CMD mri_robust_template --mov
/groups/wallacegrp/DNS_highRes_N892/mri/orig/000.mgz
/groups/wallacegrp/DNS_highRes_N892/mri/orig/001.mgz
/groups/wallacegrp/DNS_highRes_N892/mri/orig/002.mgz
...
/groups/wallacegrp/DNS_highRes_N892/mri/orig/888.lta
/groups/wallacegrp/DNS_highRes_N892/mri/orig/889.lta
/groups/wallacegrp/DNS_highRes_N892/mri/orig/890.lta
/groups/wallacegrp/DNS_highRes_N892/mri/orig/891.lta
I was hoping you could give me some advice on how to deal with this error,
or help me determine whether this is a freesurfer error, or has to do with
something else.
Thanks so much!
--
Esha Mehta585-967-7223
emeht...@gwu.edu
George Washington University, Class of 2017
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