Hello, I am extremely new FreeSurfer user, and have hit a bump in the road while trying to run -autorecon1 and -autorecon2. The process seemed to be running smoothly until I got the following warning messages for every file number, and then it was randomly killed-
* WARNING: TP 890 to 1 did not converge !! * WARNING: TP 891 to 1 did not converge !! * WARNING: TP 892 to 1 did not converge !! mapping movs and creating initial template... allow intensity scaling Linux login4 2.6.32-431.5.1.el6.x86_64 #1 SMP Fri Jan 10 14:46:43 EST 2014 x86_64 x86_64 x86_64 GNU/Linux recon-all -s DNS_highRes_N892 exited with ERRORS at Mon Jul 21 10:48:23 EDT 2014 Within the error log, there was also an extremely lengthy command, and I believe could have been part of the issue as well. It is way to long to post here, but here is how it begins and ends- CMD mri_robust_template --mov /groups/wallacegrp/DNS_highRes_N892/mri/orig/000.mgz /groups/wallacegrp/DNS_highRes_N892/mri/orig/001.mgz /groups/wallacegrp/DNS_highRes_N892/mri/orig/002.mgz ... /groups/wallacegrp/DNS_highRes_N892/mri/orig/888.lta /groups/wallacegrp/DNS_highRes_N892/mri/orig/889.lta /groups/wallacegrp/DNS_highRes_N892/mri/orig/890.lta /groups/wallacegrp/DNS_highRes_N892/mri/orig/891.lta I was hoping you could give me some advice on how to deal with this error, or help me determine whether this is a freesurfer error, or has to do with something else. Thanks so much! -- Esha Mehta 585-967-7223 emeht...@gwu.edu George Washington University, Class of 2017
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