Is the size of the volume (row, cols, or slices) changing between the runs?
On 07/30/2014 04:18 PM, bbr...@bidmc.harvard.edu wrote: > Hi Doug, > > I have been getting an error message when preprocessing data on 2 subjects in > stable 4 (using the same command worked fine, however, with several others). > > The command I ran was: preproc-sess -smout fmcsm6 -fwhm 6 -s Con7_self -df > sesspar > > The error message I get is pasted below. > > Any suggestions about how to fix this would be much appreciated! > > Thanks, > > Ben > > /autofs/space/tyra_001/users/gcoombs/self/subjects/Con7_self/bold > 3dvolreg -verbose -dfile 003/fmc.mcdat -base > 003/tmp.mc-afni2.6069/tempvol.nii.gz -prefix > 003/tmp.mc-afni2.6069/outvol.nii.gz 003/tmp.mc-afni2.6069/invol.nii.gz > ++ 3dvolreg: AFNI version=AFNI_2011_12_21_1014 (Aug 29 2012) [64-bit] > ++ Authored by: RW Cox > *+ WARNING: If you are performing spatial transformations on an oblique > dset, > such as 003/tmp.mc-afni2.6069/tempvol.nii.gz, > or viewing/combining it with volumes of differing obliquity, > you should consider running: > 3dWarp -deoblique > on this and other oblique datasets in the same session. > See 3dWarp -help for details. > ++ Oblique dataset:003/tmp.mc-afni2.6069/tempvol.nii.gz is 12.500000 degrees > from plumb. > ++ Reading in base dataset 003/tmp.mc-afni2.6069/tempvol.nii.gz > ++ Oblique dataset:003/tmp.mc-afni2.6069/invol.nii.gz is 17.700005 degrees > from plumb. > ++ centers of base and input datasets are 26.86 mm apart > ** Input 003/tmp.mc-afni2.6069/invol.nii.gz and base > 003/tmp.mc-afni2.6069/tempvol.nii.gz don't have same dimensions! > Input: nx=64 ny=64 nz=33 > Base: nx=256 ny=256 nz=128 > ** Input 003/tmp.mc-afni2.6069/invol.nii.gz and base > 003/tmp.mc-afni2.6069/tempvol.nii.gz don't have same grid spacing! > Input: dx= 2.969 dy= 2.969 dz= 3.000 > Base: dx= 1.000 dy=-1.000 dz= 1.330 > ** Input 003/tmp.mc-afni2.6069/invol.nii.gz and base > 003/tmp.mc-afni2.6069/tempvol.nii.gz don't have same orientation! > Input: R-L A-P I-S > Base: A-P S-I R-L > ** FATAL ERROR: perhaps you could make your datasets match? > ERROR: 3dvolreg > Invalid null command. > ERROR: mc-sess failed > > > Benjamin Brent, M.D., M.S. > Massachusetts Mental Health Center > 75 Fenwood Road, Room 618 > Boston, MA 02115 > 617-754-1262 > > This message is intended for the use of the person(s) to whom it may be > addressed. It may contain information that is privileged, confidential, or > otherwise protected from disclosure under applicable law. If you are not the > intended recipient, any dissemination, distribution, copying, or use of this > information is prohibited. If you have received this message in error, please > permanently delete it and immediately notify the sender. Thank you. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
