Is gunzip in your path? When you open a shell and type
which gunzip
what is printed out?
On 07/30/2014 10:45 AM, Sarina Iwabuchi wrote:
> Hi Bruce,
>
> It still shows the same error:
>
> set: Variable name must begin with a letter.
> gunzip: Command not found.
> ERROR: problem reading fname
> set: Variable name must begin with a letter.
> rm: Command not found.
> SWITCH expression must be a scalar or string constant.
>
> Error in load_mgh (line 158)
> switch type
>
> Error in MRIread (line 87)
> [mri.vol, M, mr_parms, volsz] = load_mgh(fspec,[],[],headeronly);
>
> Sarina
>
> On 30 Jul 2014, at 14:23, Bruce Fischl wrote:
>
>> Hi Sarina,
>>
>> you need to have $FREESURFER_HOME/matlab in your matlab path. Try:
>>
>> addpath(sprintf('%s/matlab', getenv('FREESURFER_HOME')))
>>
>> cheers
>> Bruce
>>
>> On Wed,
>> 30 Jul 2014, Sarina Iwabuchi wrote:
>>
>>> Hi Doug,
>>> I get the following error:
>>>
>>> Undefined function 'MRIread' for input arguments of type 'char'.
>>>
>>> Sarina
>>>
>>> On 29 Jul 2014, at 18:34, Douglas N Greve wrote:
>>>
>>> a =
>>> MRIread('/Volumes/HD-PNTU3/MISSEDDATA/extn003/surf/tmp-mris_compute_lgi-lh.
>>> pial/lh.pial.filled.mgz');
>>>
>>>
>>> Sarina IwabuchiDivision of Psychiatry and Applied Psychology
>>> Room B07 Institute of Mental Health
>>> Triumph Road
>>> University of Nottingham
>>> Nottingham NG7 2TU
>>>
>>>
>>> This message and any attachment are intended solely for the addressee and
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>>>
>>> This message has been checked for viruses but the contents of an attachment
>>> may still contain software viruses which could damage your computer system,
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>>>
>>>
>>>
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> Sarina Iwabuchi
> Division of Psychiatry and Applied Psychology
> Room B07 Institute of Mental Health
> Triumph Road
> University of Nottingham
> Nottingham NG7 2TU
>
> This message and any attachment are intended solely for the addressee and may
> contain confidential information. If you have received this message in error,
> please send it back to me, and immediately delete it. Please do not use,
> copy or disclose the information contained in this message or in any
> attachment. Any views or opinions expressed by the author of this email do
> not necessarily reflect the views of the University of Nottingham.
>
> This message has been checked for viruses but the contents of an attachment
> may still contain software viruses which could damage your computer system,
> you are advised to perform your own checks. Email communications with the
> University of Nottingham may be monitored as permitted by UK legislation.
>
>
>
>
>
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>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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