Hi Bruce,

It still shows the same error:

set: Variable name must begin with a letter.
gunzip: Command not found.
ERROR: problem reading fname
set: Variable name must begin with a letter.
rm: Command not found.
SWITCH expression must be a scalar or string constant.

Error in load_mgh (line 158)
switch type

Error in MRIread (line 87)
  [mri.vol, M, mr_parms, volsz] = load_mgh(fspec,[],[],headeronly);
 
Sarina

On 30 Jul 2014, at 14:23, Bruce Fischl wrote:

> Hi Sarina,
> 
> you need to have $FREESURFER_HOME/matlab in your matlab path. Try:
> 
> addpath(sprintf('%s/matlab', getenv('FREESURFER_HOME')))
> 
> cheers
> Bruce
> 
> On Wed, 
> 30 Jul 2014, Sarina Iwabuchi wrote:
> 
>> Hi Doug,
>> I get the following error:
>> 
>> Undefined function 'MRIread' for input arguments of type 'char'.
>> 
>> Sarina
>> 
>> On 29 Jul 2014, at 18:34, Douglas N Greve wrote:
>> 
>>      a = 
>> MRIread('/Volumes/HD-PNTU3/MISSEDDATA/extn003/surf/tmp-mris_compute_lgi-lh.
>>      pial/lh.pial.filled.mgz');
>> 
>> 
>> Sarina IwabuchiDivision of Psychiatry and Applied Psychology
>> Room B07 Institute of Mental Health
>> Triumph Road
>> University of Nottingham
>> Nottingham NG7 2TU
>> 
>> 
>> This message and any attachment are intended solely for the addressee and
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>> error, please send it back to me, and immediately delete it.   Please do not
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>> attachment.  Any views or opinions expressed by the author of this email do
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>> 
>> This message has been checked for viruses but the contents of an attachment
>> may still contain software viruses which could damage your computer system,
>> you are advised to perform your own checks. Email communications with the
>> University of Nottingham may be monitored as permitted by UK legislation.
>> 
>> 
>> 
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Sarina Iwabuchi
Division of Psychiatry and Applied Psychology
Room B07 Institute of Mental Health
Triumph Road
University of Nottingham
Nottingham NG7 2TU

This message and any attachment are intended solely for the addressee and may 
contain confidential information. If you have received this message in error, 
please send it back to me, and immediately delete it.   Please do not use, copy 
or disclose the information contained in this message or in any attachment.  
Any views or opinions expressed by the author of this email do not necessarily 
reflect the views of the University of Nottingham.

This message has been checked for viruses but the contents of an attachment
may still contain software viruses which could damage your computer system, you 
are advised to perform your own checks. Email communications with the 
University of Nottingham may be monitored as permitted by UK legislation.





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