Dear FS experts,
I had no answer to my question below (log was attached in my previous mail)
The error repeated in different subjects and I do not know how to
overcome. Can anyone give me some help?
Angela
Hi all,
I had an error message while running LGI recon
I am using Freesurfer 5.3 with a MacOS lion 10.7.5 and Matlab 2013b with
the Image processing toolbox
Any help is welcome. Thank you!
Angela
the error is:
mesh_outer =
vertices: [61278x3 double]
faces: [122552x3 double]
facesOfVertex: [61278x1 struct]
preparing pial mesh structure ...
...searching for mesh edges...done (315.30 sec).
... creating path file for vertex 1 / 61278
area file for outer ROIs saved at 1
{Improper assignment with rectangular empty matrix.
Error in dsearchn (line 79)
[d(i),t(i)] = min(sum((x-yi).^2,2));
Error in mesh_vertex_nearest (line 29)
nearestIndex = dsearchn(vertices,points);
Error in reorganize_verticeslist (line 28)
[nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:));
Error in make_roi_paths (line 93)
reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim,
verticeslist, step);
}
>>
ERROR: make_roi_paths did not complete successfully!
Darwin iMac-di-Angela.local 11.4.2 Darwin Kernel Version 11.4.2: Thu Aug
23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64
recon-all -s subj001 exited with ERRORS at Tue Jul 15 10:23:17 CEST 2014
To report a problem, see
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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