thank you Marie!
> > Hi Angela, > > Have you tried that: > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg30506.html ? > > You can look also in the release notes > (http://freesurfer.net/fswiki/ReleaseNotes), under LGI issue when using > Matlab 2013. > > The issue will be corrected in the next FreeSurfer release. > > Let mw know if it doesn't work, > > Marie > > > > On Jul 19, 2014, at 1:56 AM, angela.fav...@unipd.it wrote: > >> Dear FS experts, >> I had no answer to my question below (log was attached in my previous >> mail) >> The error repeated in different subjects and I do not know how to >> overcome. Can anyone give me some help? >> >> Angela >> >> >> >> Hi all, >> I had an error message while running LGI recon >> I am using Freesurfer 5.3 with a MacOS lion 10.7.5 and Matlab 2013b with >> the Image processing toolbox >> >> Any help is welcome. Thank you! >> Angela >> >> >> the error is: >> >> mesh_outer = >> >> vertices: [61278x3 double] >> faces: [122552x3 double] >> facesOfVertex: [61278x1 struct] >> >> preparing pial mesh structure ... >> ...searching for mesh edges...done (315.30 sec). >> ... creating path file for vertex 1 / 61278 >> area file for outer ROIs saved at 1 >> {Improper assignment with rectangular empty matrix. >> >> Error in dsearchn (line 79) >> [d(i),t(i)] = min(sum((x-yi).^2,2)); >> >> Error in mesh_vertex_nearest (line 29) >> nearestIndex = dsearchn(vertices,points); >> >> Error in reorganize_verticeslist (line 28) >> >> [nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:)); >> >> Error in make_roi_paths (line 93) >> reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, >> perim, >> verticeslist, step); >> } >>>> >> ERROR: make_roi_paths did not complete successfully! >> Darwin iMac-di-Angela.local 11.4.2 Darwin Kernel Version 11.4.2: Thu Aug >> 23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64 >> >> recon-all -s subj001 exited with ERRORS at Tue Jul 15 10:23:17 CEST 2014 >> >> To report a problem, see >> http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
