Hi Las
it's tough to tell from just those images. Can you upload the entire
subject directory?
cheers
Bruce
On Fri, 18 Jul 2014, Las Blawimo wrote:
Dear dr. Fischl,
I was wondering if you've had any chance to look at our images (image 3 and
4 are attached to a second e-mail with the subject: Anterior Temporal Lobe /
Pial Reconstruction Troubles - part 2)?
Sincerely,
Las
2014-07-11 16:06 GMT+02:00 Las Blawimo <lasblaw...@gmail.com>:
Dear Dr. Fischl,
Thanks for your quick reply.
Attached you will find some images (image 1&2) showing the
issues we're having (I'll send a second e-mail including image
3&4).
The images are as follows:
1.) sagittal_1353_norm2+3T_vs_default -> the v5.3 suggested
norm2 flags (from the release notes) and the -3T flag vs. the
default v5.3 pipeline. Blue is the norm2/3T flag pipeline,
yellow is the default.
2.) sagittal_1353_wusl_vs_default->v5.3 using the -washu_mprage
flag, obvious improvement in temporal lobe pial surface. Blue is
-washu_mprage flag, yellow is the default v5.3 pipeline
3.) axial_1353_norm2+3T_white -> The white surface, which
appears OK using v5.3 with the suggested norm2 parameters and
the -3T flag
4.) axial_1353_wusl_white_error -> the white surface, with an
obvious error in the lh_postcentral area, using the
-washu_mprage flag.
Let me know if you have any suggestions on other parameters I
should try to improve the temporal lobe pial surface, without
compromising the white matter surface reconstruction.
Sincerely,
Las
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