Hi pfannmoe this is a bug in mri_label2label that we fixed a while ago. Zeke: can post a new version and let people on the list know where it is?
thanks Bruce On Fri, 18 Jul 2014, pfannmo...@uni-greifswald.de wrote: > Dear Experts, > > I am working with freesurfer 5.3 on Mac OSX. I applied recon-all to a data > set. This has been done with the same data on a Linux system with Freesurfer > 5.3 without any problems. Everything works fine on the Mac except of the > labelling of Brodmann Areas. On the Mac the regions are not created as a > single areal with a border at the outline. Instead they consist of an outside > border and several small regions inside the label. > > I already tried to create the Brodmann Areas by myself using the command: > > mri_label2label --srclabel /.../subjects/fsaverage/label/lh.BA3b.label > --srcsubject fsaverage --trglabel lh.BA3b.test.label --trgsubject subjid > --regmethod surface --hemi lh > > > This does not change the result. I attached a screen shot of the label in > fsaverage and one of my subjects. Any help is highly appreciated. > > Regards pfannmoe > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
