Dear dr. Fischl, I was wondering if you've had any chance to look at our images (image 3 and 4 are attached to a second e-mail with the subject: Anterior Temporal Lobe / Pial Reconstruction Troubles - part 2)?
Sincerely, Las 2014-07-11 16:06 GMT+02:00 Las Blawimo <lasblaw...@gmail.com>: > Dear Dr. Fischl, > > Thanks for your quick reply. > > Attached you will find some images (image 1&2) showing the issues we're > having (I'll send a second e-mail including image 3&4). > > The images are as follows: > > 1.) sagittal_1353_norm2+3T_vs_default -> the v5.3 suggested norm2 flags > (from the release notes) and the -3T flag vs. the default v5.3 pipeline. > Blue is the norm2/3T flag pipeline, yellow is the default. > > 2.) sagittal_1353_wusl_vs_default->v5.3 using the -washu_mprage flag, > obvious improvement in temporal lobe pial surface. Blue is -washu_mprage > flag, yellow is the default v5.3 pipeline > > 3.) axial_1353_norm2+3T_white -> The white surface, which appears OK > using v5.3 with the suggested norm2 parameters and the -3T flag > > 4.) axial_1353_wusl_white_error -> the white surface, with an obvious > error in the lh_postcentral area, using the -washu_mprage flag. > > Let me know if you have any suggestions on other parameters I should try > to improve the temporal lobe pial surface, without compromising the white > matter surface reconstruction. > > Sincerely, > > Las >
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