Hi Doug, I did create them in windows. I will recreate them on the linux machine and carry out the processing.
Thanks for the help. Mohammed On Mon, Jun 23, 2014 at 1:38 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > That does look pretty silly. How did you create your qdec.table.dat and > level files? If you created them under windows, then that could be the > problem. If not, post your qdec.table.dat file and the gender.level file > and I'll take a look > > On 06/23/2014 01:33 PM, Mohammed Goryawala wrote: > > Hello FreeSurfer Experts, > > > > I am trying to run QDEC for a group comparison study. I am following > > the tutorial found on > > > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QdecGroupAnalysis_freeview > > > > However, when I try to load my data table it returns the error. > > > > ---------------------------------------------------- > > Loading data table /home/pcopy_project/qdec/qdec.table.dat... > > Number of columns: 5 > > fsid column: 1 > > Number of factors: 4 > > Number of subjects: 57 > > Reading discrete factor levels from config file > > /home/pcopy_project/qdec/gender.levels > > Female > > Male > > done. > > Reading discrete factor levels from config file > > /home/pcopy_project/qdec/diagnosis.levels > > Control > > Disease > > done. > > > > ERROR: Subject SIYA_001 has an invalid level 'Male' in the gender column > > INFO: If 'gender' is a discrete factor, then create a file > > named 'gender.levels' containing the valid factor names > > one per line. > > Error loading the data table. > > -------------------------------------------------------- > > > > As you see I have a 'gender.levels' file in the same directory as the > > data file and it reads it above. I still get the error. > > > > I am new to QDEC and any help would be appreciated. > > > > Thank you > > Mohammed Goryawala, PhD > > Research Associate > > Department of Radiology > > University of Miami Miller School of Medicine > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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