That does look pretty silly. How did you create your qdec.table.dat and level files? If you created them under windows, then that could be the problem. If not, post your qdec.table.dat file and the gender.level file and I'll take a look
On 06/23/2014 01:33 PM, Mohammed Goryawala wrote: > Hello FreeSurfer Experts, > > I am trying to run QDEC for a group comparison study. I am following > the tutorial found on > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QdecGroupAnalysis_freeview > > However, when I try to load my data table it returns the error. > > ---------------------------------------------------- > Loading data table /home/pcopy_project/qdec/qdec.table.dat... > Number of columns: 5 > fsid column: 1 > Number of factors: 4 > Number of subjects: 57 > Reading discrete factor levels from config file > /home/pcopy_project/qdec/gender.levels > Female > Male > done. > Reading discrete factor levels from config file > /home/pcopy_project/qdec/diagnosis.levels > Control > Disease > done. > > ERROR: Subject SIYA_001 has an invalid level 'Male' in the gender column > INFO: If 'gender' is a discrete factor, then create a file > named 'gender.levels' containing the valid factor names > one per line. > Error loading the data table. > -------------------------------------------------------- > > As you see I have a 'gender.levels' file in the same directory as the > data file and it reads it above. I still get the error. > > I am new to QDEC and any help would be appreciated. > > Thank you > Mohammed Goryawala, PhD > Research Associate > Department of Radiology > University of Miami Miller School of Medicine > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
