This is a strange error that I cannot figure out from the terminal output. What version of FS are you using? Here's something you can try:
Run selxavg3-sess with --monly sxa3.m This will return right away having created sxa3.m Start matlab and run sxa3. It will stop at the error below. Then type flac0.inorm gmean Each of these will print something out to the terminal. Send the results to the list doug On 06/02/2014 06:27 AM, pfannmo...@uni-greifswald.de wrote: > Dear Experts, > > during an fsfast analysis an error occured after selxavg3-sess was executed. > The corresponding commands were: > > mkanalysis-sess -fsd bold -surface self lh -fwhm 0 -event-related -paradigm > sensory.par -nconditions 1 -spmhrf 0 -TR 2 -refeventdur 10 -nskip 8 -polyfit > 2 -analysis analysis.lh -delay 0 -per-run -force -mcextreg > mkcontrast-sess -analysis analysis.lh -contrast stim-v-base -a 1 > > selxavg3-sess -s ./sessdir -analysis analysis.lh -no-preproc -force > > > > The output of selxavg3-sess was: > > > sxa3pwd = > > /.../evaluation > > sxa3cmd = > > /usr/local/freesurfer/fsfast/bin/selxavg3-sess -s ./sessdir -analysis > analysis.lh -no-preproc -force > >>> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > #@# sessdir ############################### > /.../evaluation/sessdir > ------------------------- > $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ > /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m > /usr/local/freesurfer/matlab/MRIread.m > ------------------------- > outtop = /.../evaluation > Extension format = nii.gz > 1 stim-v-base.mat > Excluding 8 points > nruns = 1 > autostimdur = > > > outanadir = /.../evaluation/sessdir/bold/analysis.lh > Excluding 8 points > Found 145573/155188 (93.8) voxels in mask > Creating Design Matrix > ... creation time = 0.008 sec > DoMCFit = 1 > ntptot = 108, nX = 15, DOF = 93 > Saving X matrix to /.../evaluation/sessdir/bold/analysis.lh/Xtmp.mat > XCond = 64.7067 (normalized) > Computing compensation for resdual AR1 bias > 1 -0.5 -0.468819 (t=0.005249) > 2 -0.25 -0.252194 (t=0.007053) > 3 0 -0.0449419 (t=0.008126) > 4 0.25 0.149516 (t=0.00935) > 5 0.5 0.319324 (t=0.010795) > AR1 Correction M: 0.0749452 1.26122 > Computing contrast matrices > OLS Beta Pass > run 1 t= 0.0 > Global Mean > Global In-Mask Mean = (0.664951) > ??? Error using ==> mrdivide > Matrix dimensions must agree. > > Error in ==> fast_selxavg3 at 434 > RescaleFactor = flac0.inorm/gmean; > >>> ------------------------------------------ > ERROR: fast_selxavg3() failed\n > > > Do you have an idea what went wrong? > > Sincerely yours pfannmoe > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
