Thank you for your Help. I figured out that it was a problem with the data which caused this error.
On Wed, 04 Jun 2014 12:00:08 -0400 Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > This is a strange error that I cannot figure out from the terminal > output. What version of FS are you using? Here's something you can try: > > Run selxavg3-sess with --monly sxa3.m This will return right away having > created sxa3.m > > Start matlab and run sxa3. It will stop at the error below. Then type > > flac0.inorm > > gmean > > Each of these will print something out to the terminal. Send the results > to the list > > doug > > > On 06/02/2014 06:27 AM, pfannmo...@uni-greifswald.de wrote: > > Dear Experts, > > > > during an fsfast analysis an error occured after selxavg3-sess was > > executed. The corresponding commands were: > > > > mkanalysis-sess -fsd bold -surface self lh -fwhm 0 -event-related -paradigm > > sensory.par -nconditions 1 -spmhrf 0 -TR 2 -refeventdur 10 -nskip 8 > > -polyfit 2 -analysis analysis.lh -delay 0 -per-run -force -mcextreg > > mkcontrast-sess -analysis analysis.lh -contrast stim-v-base -a 1 > > > > selxavg3-sess -s ./sessdir -analysis analysis.lh -no-preproc -force > > > > > > > > The output of selxavg3-sess was: > > > > > > sxa3pwd = > > > > /.../evaluation > > > > sxa3cmd = > > > > /usr/local/freesurfer/fsfast/bin/selxavg3-sess -s ./sessdir -analysis > > analysis.lh -no-preproc -force > > > >>> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > > #@# sessdir ############################### > > /.../evaluation/sessdir > > ------------------------- > > $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ > > /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > > /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m > > /usr/local/freesurfer/matlab/MRIread.m > > ------------------------- > > outtop = /.../evaluation > > Extension format = nii.gz > > 1 stim-v-base.mat > > Excluding 8 points > > nruns = 1 > > autostimdur = > > > > > > outanadir = /.../evaluation/sessdir/bold/analysis.lh > > Excluding 8 points > > Found 145573/155188 (93.8) voxels in mask > > Creating Design Matrix > > ... creation time = 0.008 sec > > DoMCFit = 1 > > ntptot = 108, nX = 15, DOF = 93 > > Saving X matrix to /.../evaluation/sessdir/bold/analysis.lh/Xtmp.mat > > XCond = 64.7067 (normalized) > > Computing compensation for resdual AR1 bias > > 1 -0.5 -0.468819 (t=0.005249) > > 2 -0.25 -0.252194 (t=0.007053) > > 3 0 -0.0449419 (t=0.008126) > > 4 0.25 0.149516 (t=0.00935) > > 5 0.5 0.319324 (t=0.010795) > > AR1 Correction M: 0.0749452 1.26122 > > Computing contrast matrices > > OLS Beta Pass > > run 1 t= 0.0 > > Global Mean > > Global In-Mask Mean = (0.664951) > > ??? Error using ==> mrdivide > > Matrix dimensions must agree. > > > > Error in ==> fast_selxavg3 at 434 > > RescaleFactor = flac0.inorm/gmean; > > > >>> ------------------------------------------ > > ERROR: fast_selxavg3() failed\n > > > > > > Do you have an idea what went wrong? > > > > Sincerely yours pfannmoe > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Joerg Pfannmoeller <pfannmo...@uni-greifswald.de> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
