Hi Nick. I can, but I'm hoping to get 5.1 working as all our data is processed in 5.1. That being said we could at least get 5.3 working to look at data processed on other machines.
However, I'm a little concerned that we will be forced to update our OS's at some point which will break 5.1. Thanks. -John ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Nick Schmansky, MGH [ni...@nmr.mgh.harvard.edu] Sent: Tuesday, April 29, 2014 2:21 PM To: Freesurfer support list Cc: Zeke Kaufman Subject: Re: [Freesurfer] Segmentatoin fault using Freesurfer Functions Fedora 19 - Freesurfer 5.1 John, I just noticed that you are looking for v5.1, and that we don't have a centos6 build of that (we started those with v5.2). Can you try v5.3? N. On Tue, 2014-04-29 at 12:20 +0000, West, John D. wrote: > Hey Nick. > > Good idea. Is there a Centos6 version of Freesurfer 5.1 I can download > somewhere? > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Nick Schmansky, > MGH > Sent: Monday, April 28, 2014 1:35 PM > To: Freesurfer support list > Cc: Zeke Kaufman > Subject: Re: [Freesurfer] Segmentatoin fault using Freesurfer Functions > Fedora 19 - Freesurfer 5.1 > > John, > > Have you tried the Centos6_x86_64 build of freesurfer on Fedora 19? The > Centos4_x86_64 build is built against a rather old kernel, and likely to go > away soon anyway. > > Generally a debug build is not of much use for tkmedit seg-faults. If you > still have trouble after trying the centos6 build, and the segfaults occur > with mri_convert using data contained within freesurfer's sample subjects dir > (freesurfer/subjects), then we can send a debug build of mri_convert. > > Nick > > > On Sat, 2014-04-26 at 13:03 +0000, West, John D. wrote: > > Hi Bruce. > > > > Thanks so much for the offer of help. I would really appreciate it. > > If you can send me the files and then let me know what I need to > > capture I'll try it out. > > > > Thanks. > > -John > > > > Sent from my Windows Phone > > > > ______________________________________________________________________ > > From:Bruce Fischl > > Sent:4/25/2014 11:38 PM > > To:Freesurfer support list > > Subject:Re: [Freesurfer] Segmentatoin fault using Freesurfer Functions > > Fedora 19 - Freesurfer 5.1 > > > > > > Hi John > > > > we could give you a version with debugging info and source and you > > could run it in gdb and find out where it is crashing. Or you could > > send us the core fie from a version with debugging on > > > > cheers > > Bruce > > > > On Fri, 25 Apr 2014, West, > > John D. wrote: > > > > > > > > Hello. > > > > > > > > > We are trying to get Freesurfer 5.1 to work on Fedora 19. The > > functions we have tried show the help > > > menu successfully when asked, but run into a Segmentation Fault when > > trying to process anything. Both > > > tkmedit and mri_convert have shown this behavior. Segmentation > > Faults are notoriously hard to track > > > down, but do you have any suggestions as to what may be causing > > this? This version of freesurfer seems > > > to work fine on fedora 17 and older. > > > > > > > > > > > > We are using the CentOS4 x86_64 version of Freesurfer 5.1. > > > > > > > > > > > > Thanks. > > > > > > -John West > > > > > > Systems Administrator > > > > > > IU Center for Neuroimaging > > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at http://www.partners.org/complianceline . If the e-mail was sent to you in > error but does not contain patient information, please contact the sender and > properly dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
