John, I just noticed that you are looking for v5.1, and that we don't have a centos6 build of that (we started those with v5.2). Can you try v5.3?
N. On Tue, 2014-04-29 at 12:20 +0000, West, John D. wrote: > Hey Nick. > > Good idea. Is there a Centos6 version of Freesurfer 5.1 I can download > somewhere? > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Nick Schmansky, > MGH > Sent: Monday, April 28, 2014 1:35 PM > To: Freesurfer support list > Cc: Zeke Kaufman > Subject: Re: [Freesurfer] Segmentatoin fault using Freesurfer Functions > Fedora 19 - Freesurfer 5.1 > > John, > > Have you tried the Centos6_x86_64 build of freesurfer on Fedora 19? The > Centos4_x86_64 build is built against a rather old kernel, and likely to go > away soon anyway. > > Generally a debug build is not of much use for tkmedit seg-faults. If you > still have trouble after trying the centos6 build, and the segfaults occur > with mri_convert using data contained within freesurfer's sample subjects dir > (freesurfer/subjects), then we can send a debug build of mri_convert. > > Nick > > > On Sat, 2014-04-26 at 13:03 +0000, West, John D. wrote: > > Hi Bruce. > > > > Thanks so much for the offer of help. I would really appreciate it. > > If you can send me the files and then let me know what I need to > > capture I'll try it out. > > > > Thanks. > > -John > > > > Sent from my Windows Phone > > > > ______________________________________________________________________ > > From:Bruce Fischl > > Sent:4/25/2014 11:38 PM > > To:Freesurfer support list > > Subject:Re: [Freesurfer] Segmentatoin fault using Freesurfer Functions > > Fedora 19 - Freesurfer 5.1 > > > > > > Hi John > > > > we could give you a version with debugging info and source and you > > could run it in gdb and find out where it is crashing. Or you could > > send us the core fie from a version with debugging on > > > > cheers > > Bruce > > > > On Fri, 25 Apr 2014, West, > > John D. wrote: > > > > > > > > Hello. > > > > > > > > > We are trying to get Freesurfer 5.1 to work on Fedora 19. The > > functions we have tried show the help > > > menu successfully when asked, but run into a Segmentation Fault when > > trying to process anything. Both > > > tkmedit and mri_convert have shown this behavior. Segmentation > > Faults are notoriously hard to track > > > down, but do you have any suggestions as to what may be causing > > this? This version of freesurfer seems > > > to work fine on fedora 17 and older. > > > > > > > > > > > > We are using the CentOS4 x86_64 version of Freesurfer 5.1. > > > > > > > > > > > > Thanks. > > > > > > -John West > > > > > > Systems Administrator > > > > > > IU Center for Neuroimaging > > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at http://www.partners.org/complianceline . If the e-mail was sent to you in > error but does not contain patient information, please contact the sender and > properly dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
