John, Have you tried the Centos6_x86_64 build of freesurfer on Fedora 19? The Centos4_x86_64 build is built against a rather old kernel, and likely to go away soon anyway.
Generally a debug build is not of much use for tkmedit seg-faults. If you still have trouble after trying the centos6 build, and the segfaults occur with mri_convert using data contained within freesurfer's sample subjects dir (freesurfer/subjects), then we can send a debug build of mri_convert. Nick On Sat, 2014-04-26 at 13:03 +0000, West, John D. wrote: > Hi Bruce. > > Thanks so much for the offer of help. I would really appreciate it. > If you can send me the files and then let me know what I need to > capture I'll try it out. > > Thanks. > -John > > Sent from my Windows Phone > > ______________________________________________________________________ > From:Bruce Fischl > Sent:4/25/2014 11:38 PM > To:Freesurfer support list > Subject:Re: [Freesurfer] Segmentatoin fault using Freesurfer Functions > Fedora 19 - Freesurfer 5.1 > > > Hi John > > we could give you a version with debugging info and source and you > could > run it in gdb and find out where it is crashing. Or you could send us > the > core fie from a version with debugging on > > cheers > Bruce > > On Fri, 25 Apr 2014, West, > John D. wrote: > > > > > Hello. > > > > > > We are trying to get Freesurfer 5.1 to work on Fedora 19. The > functions we have tried show the help > > menu successfully when asked, but run into a Segmentation Fault when > trying to process anything. Both > > tkmedit and mri_convert have shown this behavior. Segmentation > Faults are notoriously hard to track > > down, but do you have any suggestions as to what may be causing > this? This version of freesurfer seems > > to work fine on fedora 17 and older. > > > > > > > > We are using the CentOS4 x86_64 version of Freesurfer 5.1. > > > > > > > > Thanks. > > > > -John West > > > > Systems Administrator > > > > IU Center for Neuroimaging > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
