Run with those flags using the version of FS that you analyzed them with originally
On 04/25/2014 09:55 AM, Yizhou Ma wrote: > Hi Doug, > > To follow-up: I have been running recon-all subject -qcache but for > some of my subjects it "exited with ERRORS" due to unmatched number of > vertices. I read from previous threads that the general fix is to run > -autorecon2 and -autorecon3 again. However, I hesitate to do that in > my case due to the difference in Freesurfer versions. What do you > think I can do? > > Thanks, > Cherry > > > On Thu, Apr 24, 2014 at 12:06 PM, Yizhou Ma <ym...@nyu.edu > <mailto:ym...@nyu.edu>> wrote: > > Great. Thanks Doug. > > > On Thu, Apr 24, 2014 at 10:39 AM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > It is ok to run -qcache using 5.3. > > > On 04/23/2014 10:54 PM, Yizhou Ma wrote: > > Dear Freesurfer experts, > > > > I have processed my images and done analysis with cortical > thickness > > using FS510. Now that I want to do vertex-wise analysis with > surface > > area and volume, I learned that there is a bug in FS510 with > this. > > > > (https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/019903.html) > > Before I go on to use recon-all subject -qcache in FS530 to > generate > > vertex-wise surface area and volume maps, I want to make > sure that > > this would not cause concerns about use of mixed versions of > > Freesurfer, or concerns about interpreting my cortical > thickness and > > surface area/volume findings together. And if it does, what > should I do? > > > > Thanks a lot, > > Cherry > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person > to whom it is > addressed. If you believe this e-mail was sent to you in error > and the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was > sent to you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
