Hi Doug, To follow-up: I have been running recon-all subject -qcache but for some of my subjects it "exited with ERRORS" due to unmatched number of vertices. I read from previous threads that the general fix is to run -autorecon2 and -autorecon3 again. However, I hesitate to do that in my case due to the difference in Freesurfer versions. What do you think I can do?
Thanks, Cherry On Thu, Apr 24, 2014 at 12:06 PM, Yizhou Ma <ym...@nyu.edu> wrote: > Great. Thanks Doug. > > > On Thu, Apr 24, 2014 at 10:39 AM, Douglas N Greve < > gr...@nmr.mgh.harvard.edu> wrote: > >> >> It is ok to run -qcache using 5.3. >> >> >> On 04/23/2014 10:54 PM, Yizhou Ma wrote: >> > Dear Freesurfer experts, >> > >> > I have processed my images and done analysis with cortical thickness >> > using FS510. Now that I want to do vertex-wise analysis with surface >> > area and volume, I learned that there is a bug in FS510 with this. >> > ( >> https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/019903.html >> ) >> > Before I go on to use recon-all subject -qcache in FS530 to generate >> > vertex-wise surface area and volume maps, I want to make sure that >> > this would not cause concerns about use of mixed versions of >> > Freesurfer, or concerns about interpreting my cortical thickness and >> > surface area/volume findings together. And if it does, what should I do? >> > >> > Thanks a lot, >> > Cherry >> > >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >
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