Hi Ed you could just use the ribbon if you want the filled space between the surfaces, but you can't get a nice continuous contour in a voxel volume as by its nature it is discretized
cheers Bruce On Mon, 14 Apr 2014, Ed Gronenschild wrote: > Hi, > > When using tkmedit or freeview, a surface is converted > into a contour superimposed onto T1. I would like > to do the same using the command: > > mri_surf2vol --surf pial --hemi lh --template subjID/mri/T1.mgz \ > --identity --o lh.pial.mgz --mkmask > > I notice that the "contour" in lh.pial.mgz is not contiguous, > a lot of gaps are present. How can I obtain a nice contiguous > contour? > > Cheers, > Ed > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
