Hi Ruthger, I've only tested the deformation on T2-space, and mostly with a flair inversion pulse, so it is probably the case that it doesn't work well with your sequence. If you want to upload the data I'll try to take a look, but it probably won't be soon
sorry Bruce On Mon, 14 Apr 2014, Righart, Ruthger wrote: > Dear Freesurfers, > > I have run several subjects using the -T2pial flag, to correct for dura. > For several subjects the pial surface was badly positioned after the -T2pial > flag was used (these errors did not occur when the flag was not used, in the > same subject, see PDF, left vs right panel). > > I was wondering if adding this flag might be problematic in some patient > groups, like cerebrovascular disease or multiple sclerosis, with regard to T2 > (hyperintense) lesions. > > Best, > Ruthger _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
