Thanks Doug, I've FileDropped you the zip. Running FS 5.3.0 on Virtualbox 4.2.12 (Ubuntu guest, Windows host) T
On 4 April 2014 22:09, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > Can you upload the y.mgh file and fsgd file so that I can try to replicate > it? What platform are you running on and what version of FS? > doug > > > On 04/02/2014 06:34 PM, Tudor Popescu wrote: > >> Hi Doug >> Sorry, again I wasn't sure whether you'd noticed my reply amonst the >> latest list messages. Hopefully there is a fix for this error. >> Thanks >> Tudor >> >> >> On 2 April 2014 12:33, Tudor Popescu <tud...@gmail.com <mailto: >> tud...@gmail.com>> wrote: >> >> >> >> Your mri_glmfit-sim command line is not correct and >> does not match >> examples in the help. Basically you need to spec >> "--cache 1.3 abs" >> not "--cache 1.3 --sim-sign abs" >> >> Thanks Doug, now it worked, however I'm getting this >> error, which several other people seem to get: "Computing >> spatial average of each frame >> 0 1 2*** glibc detected *** mri_segstats: malloc(): >> memory corruption: 0x2e8df328 ***". I am running FS 5.3.0 >> through VirtualBox, 2GB ram allocated. >> >> What is your full command line? Sometimes this happens when >> setting the cwp to 1 (or close to 1). >> >> >> My command was >> mri_glmfit-sim --glmdir >> /media/math/all38subj/qdec/A2SepGroup_C_DODS_lgi_lh --cache 1.3 abs >> therefore I did not change the --cwpvalthresh input argument, >> meaning cwp presumably stayed at its default of .05. >> Terminal output is attached. >> What else can I try to make this command work? >> >> >> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
