Can you upload the y.mgh file and fsgd file so that I can try to replicate it? What platform are you running on and what version of FS? doug
On 04/02/2014 06:34 PM, Tudor Popescu wrote: > Hi Doug > Sorry, again I wasn't sure whether you'd noticed my reply amonst the > latest list messages. Hopefully there is a fix for this error. > Thanks > Tudor > > > On 2 April 2014 12:33, Tudor Popescu <tud...@gmail.com > <mailto:tud...@gmail.com>> wrote: > > > > Your mri_glmfit-sim command line is not correct and > does not match > examples in the help. Basically you need to spec > "--cache 1.3 abs" > not "--cache 1.3 --sim-sign abs" > > Thanks Doug, now it worked, however I'm getting this > error, which several other people seem to get: "Computing > spatial average of each frame > 0 1 2*** glibc detected *** mri_segstats: malloc(): > memory corruption: 0x2e8df328 ***". I am running FS 5.3.0 > through VirtualBox, 2GB ram allocated. > > What is your full command line? Sometimes this happens when > setting the cwp to 1 (or close to 1). > > > My command was > mri_glmfit-sim --glmdir > /media/math/all38subj/qdec/A2SepGroup_C_DODS_lgi_lh --cache 1.3 abs > therefore I did not change the --cwpvalthresh input argument, > meaning cwp presumably stayed at its default of .05. > Terminal output is attached. > What else can I try to make this command work? > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
