Hi Karen
I guess I would do it in matlab - load the face parcellation and the
aparc.annot, then count the number of vertices in each parcel in the face
parcellation that is in a non-cortical aparc.annot parcel, and set a
threshold for discarding them.
cheers
Bruce
On Wed, 2 Apr 2014, Karen Marie Sandø Ambrosen wrote:
Hi Bruce,
How can I remove the non-cortical parcels from the annotation file created
by mris_make_face_parcellation, such that I obtain an annotation file with
approx. the same number of parcels as ?h.aparc.annot.
Best,
Karen
On 04/01/2014 02:05 PM, Bruce Fischl wrote:
Hi Karen
sorry, I don't think so. You could certainly discard parcels
that have a substantial non-cortical component to them, but
parcellating the remainder of the surface uniformly isn't
trivial.
cheers
Bruce
On Tue, 1 Apr 2014, Karen Marie Sandø Ambrosen wrote:
Hi Freesurfer experts,
I first parcellated the ?h.aparc.annot using the
mris_divide_parcellation and at first glance it
seems fine. However, I
experienced that the size of the regions varies a
lot. I then found the
mris_make_face_parcellation, that parcellate the
surface in regions of
more equal sizes. Unfortunately the
mris_make_face_parcallation uses the
whole surface including the medial wall. Is there
any way I can get rid
of the labels covering the medial wall and obtain a
parcellation with
the same number of vertices as ?h.apac.annot, but
with regions of equal
size?
Best,
Karen
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mai
l
contains patient information, please contact the Partners Compliance HelpLin
e at
http://www.partners.org/complianceline . If the e-mail was sent to you in er
ror
but does not contain patient information, please contact the sender and prop
erly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
