Hi, I could not find the make file. I am using Mac OS (most recent). Thanks
Pedro Rosa On 21 Aug 2013, at 10:51 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > You will need to add the "make" program to your path. In Linux, it is > usually in /usr/bin > doug > > > On 08/20/2013 10:12 PM, Pedro Rosa wrote: >> Hi, >> Sorry for that! >> I tried using several targets: all / autorecon1-2-3, and for all I get >> 'make: command not found.' >> I used recon-all -s subject -make target >> Thank you again, >> Pedro Rosa >> >> On 20 Aug 2013, at 12:34 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> >> wrote: >> >>> They should be fine. BTW, you can run >>> >>> recon-all -s subject -make all >>> >>> and it will only run the parts that need to be run >>> >>> doug >>> >>> >>> On 08/20/2013 12:13 PM, Pedro Rosa wrote: >>>> Hi, >>>> I am mainly interested in using the wmparc.mgz files. Are they alright in >>>> the subjects with this error in autorecon2? It would be better if I could >>>> use this processing, as doing it again in 80 subjects would take a lot of >>>> time. Autorecon 1 and 3 ended without errors for all subjects. I inspected >>>> the wmparc.mgz files as labels using Slicer 4, and they seem fine. >>>> Thanks, >>>> Pedro Rosa. >>>> >>>> On 20 Aug 2013, at 10:28 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> >>>> wrote: >>>> >>>>> Hi Pedro, see the release notes for the issue >>>>> http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes >>>>> doug >>>>> >>>>> On 08/19/2013 10:06 PM, Pedro Rosa wrote: >>>>>> Hi experts, >>>>>> I am processing several subjects, and they all ended up with the same >>>>>> error at the autorecon2: ribbon.mgz could not be opened. I ran at first >>>>>> the autorecon1 to check the skull striping, and then autorecon2 and 3. >>>>>> Autorecon3 always finished without error. I attached a log file. >>>>>> >>>>>> >>>>>> Any help is appreciated. >>>>>> Regards, >>>>>> Pedro Rosa. >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> gr...@nmr.mgh.harvard.edu >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>>> The information in this e-mail is intended only for the person to whom it >>>>> is >>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>> e-mail >>>>> contains patient information, please contact the Partners Compliance >>>>> HelpLine at >>>>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>>>> error >>>>> but does not contain patient information, please contact the sender and >>>>> properly >>>>> dispose of the e-mail. >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
