Hi, I tried using several targets: all / autorecon1-2-3, and for all I get 'make: command not found.' I used recon-all -s subject -make target
Pedro Rosa On 20 Aug 2013, at 12:34 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > They should be fine. BTW, you can run > > recon-all -s subject -make all > > and it will only run the parts that need to be run > > doug > > > On 08/20/2013 12:13 PM, Pedro Rosa wrote: >> Hi, >> I am mainly interested in using the wmparc.mgz files. Are they alright in >> the subjects with this error in autorecon2? It would be better if I could >> use this processing, as doing it again in 80 subjects would take a lot of >> time. Autorecon 1 and 3 ended without errors for all subjects. I inspected >> the wmparc.mgz files as labels using Slicer 4, and they seem fine. >> Thanks, >> Pedro Rosa. >> >> On 20 Aug 2013, at 10:28 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> >> wrote: >> >>> Hi Pedro, see the release notes for the issue >>> http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes >>> doug >>> >>> On 08/19/2013 10:06 PM, Pedro Rosa wrote: >>>> Hi experts, >>>> I am processing several subjects, and they all ended up with the same >>>> error at the autorecon2: ribbon.mgz could not be opened. I ran at first >>>> the autorecon1 to check the skull striping, and then autorecon2 and 3. >>>> Autorecon3 always finished without error. I attached a log file. >>>> >>>> >>>> Any help is appreciated. >>>> Regards, >>>> Pedro Rosa. >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
