You will need to add the "make" program to your path. In Linux, it is usually in /usr/bin doug
On 08/20/2013 10:12 PM, Pedro Rosa wrote: > Hi, > Sorry for that! > I tried using several targets: all / autorecon1-2-3, and for all I get 'make: > command not found.' > I used recon-all -s subject -make target > Thank you again, > Pedro Rosa > > On 20 Aug 2013, at 12:34 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> > wrote: > >> They should be fine. BTW, you can run >> >> recon-all -s subject -make all >> >> and it will only run the parts that need to be run >> >> doug >> >> >> On 08/20/2013 12:13 PM, Pedro Rosa wrote: >>> Hi, >>> I am mainly interested in using the wmparc.mgz files. Are they alright in >>> the subjects with this error in autorecon2? It would be better if I could >>> use this processing, as doing it again in 80 subjects would take a lot of >>> time. Autorecon 1 and 3 ended without errors for all subjects. I inspected >>> the wmparc.mgz files as labels using Slicer 4, and they seem fine. >>> Thanks, >>> Pedro Rosa. >>> >>> On 20 Aug 2013, at 10:28 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> >>> wrote: >>> >>>> Hi Pedro, see the release notes for the issue >>>> http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes >>>> doug >>>> >>>> On 08/19/2013 10:06 PM, Pedro Rosa wrote: >>>>> Hi experts, >>>>> I am processing several subjects, and they all ended up with the same >>>>> error at the autorecon2: ribbon.mgz could not be opened. I ran at first >>>>> the autorecon1 to check the skull striping, and then autorecon2 and 3. >>>>> Autorecon3 always finished without error. I attached a log file. >>>>> >>>>> >>>>> Any help is appreciated. >>>>> Regards, >>>>> Pedro Rosa. >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> -- >>>> Douglas N. Greve, Ph.D. >>>> MGH-NMR Center >>>> gr...@nmr.mgh.harvard.edu >>>> Phone Number: 617-724-2358 >>>> Fax: 617-726-7422 >>>> >>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to whom it >>>> is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>>> error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
