Hi Stephanie, I don't know which recommendation you are referring to. We get a lot of emails, and I can't remember each one. Can you repost with the full thread? doug
On 06/06/2013 10:40 AM, McMains, Stephanie wrote: > I am wondering why you didn't tell them to go through fsvarege space? > I thought that was an easy way to go from SPM MNI to freesurfer land. > >> /tksurfer fsaverage lh inflated -aparc -mni152reg -overlay >> /pathname/to/spm/roi/yourfile.img/ > > > I am wondering because when I look at the segmentation for fsaverage, > it seems like it is missing a lot of the gray matter, particularly in > the big sulci, most likely from the 'smoothing' that comes with > averaging subjects together. And therefore I wonder if this is the > best thing to use as an intermediate step. Are you instead suggesting > (as it seemed like in this thread), to put the SPM roi into individual > subject space and then somehow project it to the surface in free surfer? > > Thanks, > Stephanie > > > +++++++++++++++++++++++++ > > Stephanie McMains > Neuroimaging Staff Scientist > Center for Brain Science > Harvard University > 52 Oxford Street > Cambridge, MA 02138 > > +++++++++++++++++++++++++ > For answers to frequently asked questions: > http://cbs.fas.harvard.edu/science/core-facilities/neuroimaging/information-investigators/faq > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
