Hi doug Thank you for giving this information, I used the command: "/tksurfer fsaverage lh inflated -aparc -mni152reg -overlay /pathname/to/spm/roi/yourfile.img/", but do not have results for me, and do not know how to do next? thanks!
Bo At 2013-06-06 23:04:30,"Douglas N Greve" <gr...@nmr.mgh.harvard.edu> wrote: >Hi Stephanie, I don't know which recommendation you are referring to. We >get a lot of emails, and I can't remember each one. Can you repost with >the full thread? >doug > > >On 06/06/2013 10:40 AM, McMains, Stephanie wrote: >> I am wondering why you didn't tell them to go through fsvarege space? >> I thought that was an easy way to go from SPM MNI to freesurfer land. >> >>> /tksurfer fsaverage lh inflated -aparc -mni152reg -overlay >>> /pathname/to/spm/roi/yourfile.img/ >> >> >> I am wondering because when I look at the segmentation for fsaverage, >> it seems like it is missing a lot of the gray matter, particularly in >> the big sulci, most likely from the 'smoothing' that comes with >> averaging subjects together. And therefore I wonder if this is the >> best thing to use as an intermediate step. Are you instead suggesting >> (as it seemed like in this thread), to put the SPM roi into individual >> subject space and then somehow project it to the surface in free surfer? >> >> Thanks, >> Stephanie >> >> >> +++++++++++++++++++++++++ >> >> Stephanie McMains >> Neuroimaging Staff Scientist >> Center for Brain Science >> Harvard University >> 52 Oxford Street >> Cambridge, MA 02138 >> >> +++++++++++++++++++++++++ >> For answers to frequently asked questions: >> http://cbs.fas.harvard.edu/science/core-facilities/neuroimaging/information-investigators/faq >> >> >> >> >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >-- >Douglas N. Greve, Ph.D. >MGH-NMR Center >gr...@nmr.mgh.harvard.edu >Phone Number: 617-724-2358 >Fax: 617-726-7422 > >Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >www.nmr.mgh.harvard.edu/facility/filedrop/index.html >Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >The information in this e-mail is intended only for the person to whom it is >addressed. If you believe this e-mail was sent to you in error and the e-mail >contains patient information, please contact the Partners Compliance HelpLine >at >http://www.partners.org/complianceline . If the e-mail was sent to you in error >but does not contain patient information, please contact the sender and >properly >dispose of the e-mail. >
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