Dear Doug, I have re-sent the whole subject via the file drop, I think everything was fine this time. Please let me know when you have an ide of what's going on with it.
Cheers, Rafa 2013/6/4 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > Hi Rafa > > this doesn't look like the whole subject dir, just some files from it > (e.g. no mri/transforms/talairach.xfm). Don't email it to me - use our ftp > site > > > cheers > Bruce > On Tue, 4 Jun 2013, Rafa X wrote: > > Hi Bruce,Thanks for your reply. I have attached the zipped subject dir >> (please, note that I had to compress it twice for sending >> >> problems). >> Rafa. >> >> >> 2013/6/4 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> Hi Rafa >> >> that sounds like a bug. Can you gzip and upload the whole subject >> dir? >> >> cheers >> Bruce >> On Tue, 4 Jun 2013, Rafa X wrote: >> >> Dear freesurfer experts, >> >> I was running an autorecon2 in the recon-all but always gives >> me this memory allocation error, only on >> this >> subject. Im using FS v5.1 >> >> >> >> #@# ASeg Stats Mon Jun 3 20:13:11 CEST 2013 >> /root/trabajo/freesurfer/**subjects/qsm1_17_stats2_g >> >> mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv >> mri/norm.mgz --empty --excludeid 0 >> --excl-ctxgmwm >> --supratent --subcortgray --in mri/norm.mgz >> --in-intensity-name norm --in-intensity-units MR --etiv >> --surf-wm-vol --surf-ctx-vol --totalgray --ctab >> /root/trabajo/freesurfer/**ASegStatsLUT.txt --subject >> qsm1_17_stats2_g >> >> >> $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks Exp $ >> cwd >> cmdline mri_segstats --seg mri/aseg.mgz --sum >> stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0 >> --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz >> --in-intensity-name norm --in-intensity-units >> MR >> --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab >> /root/trabajo/freesurfer/**ASegStatsLUT.txt >> --subject >> qsm1_17_stats2_g >> sysname Linux >> hostname localhost.localdomain >> machine x86_64 >> user root >> atlas_icv (eTIV) = 1196346 mm^3 (det: 1.628380 ) >> Loading mri/aseg.mgz >> Getting Cerebral WM volumes from surface >> lh white matter volume 206011 >> rh white matter volume 198149 >> Getting Cerebral GM and WM volumes from surfaces >> lh surface-based volumes (mm3): wTot = 235659.045132, pTot = >> 416409.266434 c = 180750.221302 >> rh surface-based volumes (mm3): wTot = 223785.748405, pTot = >> 402494.420361 c = 178708.671956 >> MRIalloc: could not allocate 540094766 frames >> >> Computing SupraTentVolCor >> Cannot allocate memory >> Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 >> 06:23:23 GMT 2006 x86_64 x86_64 x86_64 >> GNU/Linux >> >> recon-all -s qsm1_17_stats2_g exited with ERRORS at Mon Jun >> 3 20:18:36 CEST 2013 >> >> For more details, see the log file >> /root/trabajo/freesurfer/**subjects/qsm1_17_stats2_g/** >> scripts/recon-all.log >> To report a problem, see http://surfer.nmr.mgh.harvard.** >> edu/fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> >> >> >> Any help will be appreaciated, >> >> Many thanks in advance >> Rafa >> >> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >>
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