you can use bbregister to register your T2* volumes to the surface, then mri_vol2surf to sample and display it.
cheers Bruce On Tue, 23 Jul 2013, Smian wrote: > Hi everyone, > > To put things into context, I am trying to follow the four step > methodology outlined in this paper (Cohen-Adad, 2013) > http://www.sciencedirect.com/science/article/pii/S1053811913000700 > > I have already performed recon-all on MPRAGE data. I have also carried > out the following steps: > > 1) Reconstruct cortical surface > 2) Register T1 to the surface > 3) Sample T1 at a given cortical depth > 4) Register surface to fsaverage > > I have now been told to use the T2* information from the fourth echo of > separately acquired T2* weighted data and to 'overlay' (I'm not sure if > this is the correct usage of this technical term) it on the surfaces > produced (as above) of the MPRAGE data. I realize that I can't perform > recon-all on this T2* weighted data. I am assuming that I need to carry > out steps similar to 1)-4) on this new data, but I'm not sure. Would you > have any guidance on how to go about this? > > Any help would be appreciated! > > Thank you! > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
