Hi Rafa
that sounds like a bug. Can you gzip and upload the whole subject dir?
cheers
Bruce
On
Tue, 4 Jun 2013, Rafa X wrote:
Dear freesurfer experts,
I was running an autorecon2 in the recon-all but always gives me this memory
allocation error, only on this
subject. Im using FS v5.1
#@# ASeg Stats Mon Jun 3 20:13:11 CEST 2013
/root/trabajo/freesurfer/subjects/qsm1_17_stats2_g
mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz
--empty --excludeid 0 --excl-ctxgmwm
--supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm
--in-intensity-units MR --etiv
--surf-wm-vol --surf-ctx-vol --totalgray --ctab
/root/trabajo/freesurfer/ASegStatsLUT.txt --subject
qsm1_17_stats2_g
$Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks Exp $
cwd
cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv
mri/norm.mgz --empty --excludeid 0
--excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name
norm --in-intensity-units MR
--etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab
/root/trabajo/freesurfer/ASegStatsLUT.txt --subject
qsm1_17_stats2_g
sysname Linux
hostname localhost.localdomain
machine x86_64
user root
atlas_icv (eTIV) = 1196346 mm^3 (det: 1.628380 )
Loading mri/aseg.mgz
Getting Cerebral WM volumes from surface
lh white matter volume 206011
rh white matter volume 198149
Getting Cerebral GM and WM volumes from surfaces
lh surface-based volumes (mm3): wTot = 235659.045132, pTot = 416409.266434 c =
180750.221302
rh surface-based volumes (mm3): wTot = 223785.748405, pTot = 402494.420361 c =
178708.671956
MRIalloc: could not allocate 540094766 frames
Computing SupraTentVolCor
Cannot allocate memory
Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006
x86_64 x86_64 x86_64 GNU/Linux
recon-all -s qsm1_17_stats2_g exited with ERRORS at Mon Jun 3 20:18:36 CEST
2013
For more details, see the log file
/root/trabajo/freesurfer/subjects/qsm1_17_stats2_g/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Any help will be appreaciated,
Many thanks in advance
Rafa
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