glad to hear it Bruce On Tue, 26 Feb 2013, Andries R. Van Der Leij wrote:
> Hi Bruce, > > Ouch, I have quite some subjects. Luckily, with some help I found out > you can reverse it, by using: > annot2label with pial > rm *Medial_wall* > Label2surf (fsl) using a textfile containing all the other labels > > This pretty much solves it. > > Thank you again, > > Andries > > > Sent from my iPhone > > On Feb 25, 2013, at 21:37, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > >> Hi Andries >> >> you could use the cutting tools in tksurfer, although it sounds like this is >> something that we might want to make easier to do automatically. >> >> >> cheers >> Bruce >> >> On Mon, 25 Feb 2013, Andries R. Van Der Leij wrote: >> >>> Dear all, >>> >>> I am trying to prepare freesurfer surfaces for probtrackx >>> fibertracking. I use the pial surfaces to stop fibers from going back >>> into the white matter. In order to be able to track between >>> hemispheres, the medial_wall labels have to be removed from these pial >>> surfaces. I have difficulties finding out how to accomplish this. Is >>> it possible to 'mask out' the medial wall label from the *h.pial >>> surface, removing all the vertices and thus creating 'holes' in the >>> surfaces? >>> >>> Thank you very much, >>> >>> Andries van der Leij >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
