Hi Andries you could use the cutting tools in tksurfer, although it sounds like this is something that we might want to make easier to do automatically.
cheers Bruce On Mon, 25 Feb 2013, Andries R. Van Der Leij wrote: > Dear all, > > I am trying to prepare freesurfer surfaces for probtrackx > fibertracking. I use the pial surfaces to stop fibers from going back > into the white matter. In order to be able to track between > hemispheres, the medial_wall labels have to be removed from these pial > surfaces. I have difficulties finding out how to accomplish this. Is > it possible to 'mask out' the medial wall label from the *h.pial > surface, removing all the vertices and thus creating 'holes' in the > surfaces? > > Thank you very much, > > Andries van der Leij > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
