Hi Bruce, Ouch, I have quite some subjects. Luckily, with some help I found out you can reverse it, by using: annot2label with pial rm *Medial_wall* Label2surf (fsl) using a textfile containing all the other labels
This pretty much solves it. Thank you again, Andries Sent from my iPhone On Feb 25, 2013, at 21:37, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Andries > > you could use the cutting tools in tksurfer, although it sounds like this is > something that we might want to make easier to do automatically. > > > cheers > Bruce > > On Mon, 25 Feb 2013, Andries R. Van Der Leij wrote: > >> Dear all, >> >> I am trying to prepare freesurfer surfaces for probtrackx >> fibertracking. I use the pial surfaces to stop fibers from going back >> into the white matter. In order to be able to track between >> hemispheres, the medial_wall labels have to be removed from these pial >> surfaces. I have difficulties finding out how to accomplish this. Is >> it possible to 'mask out' the medial wall label from the *h.pial >> surface, removing all the vertices and thus creating 'holes' in the >> surfaces? >> >> Thank you very much, >> >> Andries van der Leij >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
