I guess it is possible that Siemens is doing something funny with the images. I've never used sagittal before.
On 11/13/2012 12:51 PM, Clark Fisher wrote: > I'm using a script that calls unpacksdcmdir. Maybe there is some setting in > our config file that forces the orientation? Nothing obvious though. > > > On Nov 13, 2012, at 12:03 PM, Douglas N Greve wrote: > >> I'm a little confused as to why the rows are not the phase encode direction >> to begin with. What did you use to convert the dicoms to nifti? >> doug >> >> On 11/13/2012 11:59 AM, Clark Fisher wrote: >>> Thanks Doug, >>> >>> Would the proper way to handle this then be to switch the rows and columns >>> before unwarping, then switch them back before the further processing steps? >>> >>> -Clark >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
