I'm using a script that calls unpacksdcmdir. Maybe there is some setting in our config file that forces the orientation? Nothing obvious though.
On Nov 13, 2012, at 12:03 PM, Douglas N Greve wrote: > I'm a little confused as to why the rows are not the phase encode direction > to begin with. What did you use to convert the dicoms to nifti? > doug > > On 11/13/2012 11:59 AM, Clark Fisher wrote: >> Thanks Doug, >> >> Would the proper way to handle this then be to switch the rows and columns >> before unwarping, then switch them back before the further processing steps? >> >> -Clark >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
