Hi Linda I'm sure Doug will reply also, but I don't think you want --reg and --regheader. I would remove the --regheader.
cheers Bruce On Fri, 10 Aug 2012, Linda Douw wrote: > Hi all, > > I'm trying to project volume BOLD time series to native surface in some > subjects. First, I registered the functional data to orig.mgz, using: > > bbregister --s subj --mov func.nii.gz --reg register.dat --init-fsl --bold > --o output.nii.gz > > The results look good in tkregister2. Then, I want to go from volume to > surf, doing: > > mri_vol2surf --mov functional.nii.gz --reg register.dat --regheader > nmr00524_FS --hemi lh --o /folder/ > > However, it gives this error message: > > Done reading source surface > Mapping Source Volume onto Source Subject Surface > 1 0 0 0 > using old > Done mapping volume to surface > Number of source voxels hit = 26361 > Writing to /folder/ > Dim: 132698 1 1 > non-standard value for imnr1 (1, usually 256) in volume structure > non-standard value for type (3, usually 0) in volume structure > non-standard value for width (132698, usually 256) in volume structure > non-standard value for height (1, usually 256) in volume structure > > I should probably use mri_vol2vol first, but which target volume should I > then use? Or is there something else I'm doing wrong? > > Thanks for your help! > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
