I'll try that. Thank you! -----Original Message----- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: dinsdag 24 april 2012 16:24 To: Popescu, V. Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: RE: [Freesurfer] mri_convert - returns different image size
I see. Then why use our wrapper at all? Just convert to nifti and run N3 directly. On Tue, 24 Apr 2012, Popescu, V. wrote: > I want to run N3 on it and then use it with FSL, and apply some masks on it > (that are the size of the original image). > > -----Original Message----- > From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Sent: dinsdag 24 april 2012 15:50 > To: Popescu, V. > Cc: 'freesurfer@nmr.mgh.harvard.edu' > Subject: RE: [Freesurfer] mri_convert - returns different image size > > thanks. And can you tell us what you are trying to achieve? If it's just > running the recons then it shouldn't matter if it's resampled to 256^3 > On > Tue, 24 Apr 2012, Popescu, V. wrote: > >> Dear Bruce, >> Sorry about this! I use mri_nu_correct.mni and the versions (1.7.2.2 and >> 1.12 respectively) are the versions of the wrapper. >> Thank you! >> Best wishes, >> Veronica >> >> -----Original Message----- >> From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] >> Sent: dinsdag 24 april 2012 15:25 >> To: Popescu, V. >> Cc: 'freesurfer@nmr.mgh.harvard.edu' >> Subject: Re: [Freesurfer] mri_convert - returns different image size >> >> Hi Veronica >> >> can you send us the command line you are using? N3 by itself doesn't use >> mri_convert - our wrappers do. >> >> cheers >> Bruce >> On Tue, 24 Apr 2012, Popescu, V. wrote: >> >>> Dear all, >>> I want to use N3 on nifti images, and I have different versions installed >>> on two machines. >>> On one machine I have an older version of N3 (1.7.2.2) which uses >>> mri_convert version 4 and everything works fine. >>> On the other machine I have N3 version 1.12 which uses mri_convert version >>> 5; this one returns a 256/256/256 image volume instead of >>> the original-like volume. >>> Is there anything I can do to ?fix? it or is there a problem if I just use >>> mri_convert version 4 instead of 5 for the newer N3? >>> Thank you very much in advance! >>> Best regards, >>> >>> Veronica Popescu >>> VU University Medical Center, Department of Radiology >>> De Boelelaan 1118, 1081 HZ Amsterdam, The Netherlands >>> Room PK -1 X 108 >>> Phone: +31 (0) 204 444 596 >>> Fax: +31 (0) 204 440 397 >>> >>> >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
