I see. Then why use our wrapper at all? Just convert to nifti and run N3
directly.
On Tue, 24 Apr 2012, Popescu, V. wrote:
I want to run N3 on it and then use it with FSL, and apply some masks on it
(that are the size of the original image).
-----Original Message-----
From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: dinsdag 24 april 2012 15:50
To: Popescu, V.
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: [Freesurfer] mri_convert - returns different image size
thanks. And can you tell us what you are trying to achieve? If it's just
running the recons then it shouldn't matter if it's resampled to 256^3
On
Tue, 24 Apr 2012, Popescu, V. wrote:
Dear Bruce,
Sorry about this! I use mri_nu_correct.mni and the versions (1.7.2.2 and 1.12
respectively) are the versions of the wrapper.
Thank you!
Best wishes,
Veronica
-----Original Message-----
From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: dinsdag 24 april 2012 15:25
To: Popescu, V.
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] mri_convert - returns different image size
Hi Veronica
can you send us the command line you are using? N3 by itself doesn't use
mri_convert - our wrappers do.
cheers
Bruce
On Tue, 24 Apr 2012, Popescu, V. wrote:
Dear all,
I want to use N3 on nifti images, and I have different versions installed on
two machines.
On one machine I have an older version of N3 (1.7.2.2) which uses mri_convert
version 4 and everything works fine.
On the other machine I have N3 version 1.12 which uses mri_convert version 5;
this one returns a 256/256/256 image volume instead of
the original-like volume.
Is there anything I can do to ?fix? it or is there a problem if I just use
mri_convert version 4 instead of 5 for the newer N3?
Thank you very much in advance!
Best regards,
Veronica Popescu
VU University Medical Center, Department of Radiology
De Boelelaan 1118, 1081 HZ Amsterdam, The Netherlands
Room PK -1 X 108
Phone: +31 (0) 204 444 596
Fax: +31 (0) 204 440 397
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