I want to run N3 on it and then use it with FSL, and apply some masks on it (that are the size of the original image).
-----Original Message----- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: dinsdag 24 april 2012 15:50 To: Popescu, V. Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: RE: [Freesurfer] mri_convert - returns different image size thanks. And can you tell us what you are trying to achieve? If it's just running the recons then it shouldn't matter if it's resampled to 256^3 On Tue, 24 Apr 2012, Popescu, V. wrote: > Dear Bruce, > Sorry about this! I use mri_nu_correct.mni and the versions (1.7.2.2 and 1.12 > respectively) are the versions of the wrapper. > Thank you! > Best wishes, > Veronica > > -----Original Message----- > From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Sent: dinsdag 24 april 2012 15:25 > To: Popescu, V. > Cc: 'freesurfer@nmr.mgh.harvard.edu' > Subject: Re: [Freesurfer] mri_convert - returns different image size > > Hi Veronica > > can you send us the command line you are using? N3 by itself doesn't use > mri_convert - our wrappers do. > > cheers > Bruce > On Tue, 24 Apr 2012, Popescu, V. wrote: > >> Dear all, >> I want to use N3 on nifti images, and I have different versions installed on >> two machines. >> On one machine I have an older version of N3 (1.7.2.2) which uses >> mri_convert version 4 and everything works fine. >> On the other machine I have N3 version 1.12 which uses mri_convert version >> 5; this one returns a 256/256/256 image volume instead of >> the original-like volume. >> Is there anything I can do to ?fix? it or is there a problem if I just use >> mri_convert version 4 instead of 5 for the newer N3? >> Thank you very much in advance! >> Best regards, >> >> Veronica Popescu >> VU University Medical Center, Department of Radiology >> De Boelelaan 1118, 1081 HZ Amsterdam, The Netherlands >> Room PK -1 X 108 >> Phone: +31 (0) 204 444 596 >> Fax: +31 (0) 204 440 397 >> >> >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
