Hey Doug, THanks. That looks simpler. I'll probably use that.
Question: Will the total volume of a ROI taken from aseg.mgz correspond to
the volume given in aseg.stats?
Josh
On Wed, Nov 30, 2011 at 9:55 AM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu>wrote:
> If you have matlab, you can load the aseg into matlab, like
> aseg = MRIread('aseg.mgz');
> vol = length(aseg.vol(:,:,n:256) == ID);
> where ID is the code number for the ROI you want as found in
> $FREESURFER_HOME/**FreeSurferColorLUT.txt
> doug
>
> Joshua Lee wrote:
>
>> Hi All,
>>
>> I would like to determine the volumes of a segmented region below or
>> above an arbitrary line in one of the planes. For example, what would be
>> the remaining volume of a label when z >= nth slice, where I would have
>> previously determined the appropriate value of n.
>>
>>
>>
>> Thanks,
>> Josh
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