This is actually something that you cannot currently do in QDEC. Try 
doing a search for "paired" on our wiki for instructions on how to do 
this type of analysis.
doug

Joana Braga Pereira wrote:
> Dear Freesurfers,
>
> I'm doing a longitudinal analysis of cortical thickness using the 
> newest version of Freesurfer and there is something i would like to 
> ask you all.
>
> I have two time points and only one group of patients.
>
> I've finished the pre-processing and am now searching for differences 
> between the two time points using Qdec.
>
> Since i only have one group my cross.qdec.table.dat file looks pretty 
> much like this:
>
> fsid         years
> template_M_b01 0.665
> template_M_b02 0.665
> template_b03        0.71
> template_b04        0.79
> template_b05        0.915
> template_b07 0.665
> template_b09 0.625
> template_b10 0.625
> template_b11 0.71
> template_b13 1.04
> template_b14 0.71
> template_b15 0.665
> template_b16 0.835
> template_b17 0.665
> template_b18 0.625
> template_M_b19 0.71
> template_M_b20 0.625
> template_b21 0.71
> template_b22 0.585
>
> I selected the long.thickness.rate in Qdec interface and years as 
> continuous covariate since it is the only variable that i have in 
> my cross.qdec.table.dat (no groups or other covariates of interest). 
>
> My question is: Is this the analysis i should be doing given that i 
> want to know the differences between time point 1 - time point 2? 
>
> Many thanks,
>
> Joana
> ------------------------------------------------------------------------
>
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-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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