Yes, that is correct. You can have it produce one time course with --id 1 doug
YUMI MAEDA wrote: > Doug, > > thank you very much. I tried with --ctab-out > my timecourse data and annot has different dimention and I got this message. > > ERROR: dimension mismatch between input volume and seg > input 96 32 96 > seg 119778 1 1 > > Then I tried this to get the same dimension, > mri_label2vol --label ./ROI.label --temp ./filtered_func_data.nii --reg > reg.dat --fillthresh 0.5 --o ./ROI_func.mgz > > mri_segstats --i ./filtered_func_data.nii --seg ROI_func.mgz --avgwf output > > I got the output which contains 2 columns. the second one seems to be > timecourese but I am not quite sure it is correct or not. and also I dont > know what is the first column. > > will you tell me about the output ? > thank you very much. > > YUMI > > > > >> You have specified two segmentations (an annotation and a segmentation). >> Just use one (probably the annot). There will be a column for each label >> in the annot. Use the --ctab-out to get a color table that indicates >> which column belongs to which region. >> doug >> >> YUMI MAEDA wrote: >> >>> HI, >>> I am trying to get timecourse from each subject within a ROI >>> with GUI as follows, >>> in tksurfer GUI, >>> Tools > timecourse > Write summary of marked vetices/label, >>> >>> I would like to do it command line, would you tell me what line I can >>> use? >>> >>> I tried to use mri_segstats >>> --i ./filtered_func_data.nii --subject subj1 --sum ./test_summary >>> --avgwf >>> test_output --annot subj1 aparc lh --seg ./testaseg-in-func.img >>> >>> the output has 7 columns and does not seems to be timecourse and also it >>> is different from the one that I get when I use GUI as I described >>> above. >>> >>> thank you very much. >>> YUMI >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
