Doug, thank you very much. I tried with --ctab-out my timecourse data and annot has different dimention and I got this message.
ERROR: dimension mismatch between input volume and seg input 96 32 96 seg 119778 1 1 Then I tried this to get the same dimension, mri_label2vol --label ./ROI.label --temp ./filtered_func_data.nii --reg reg.dat --fillthresh 0.5 --o ./ROI_func.mgz mri_segstats --i ./filtered_func_data.nii --seg ROI_func.mgz --avgwf output I got the output which contains 2 columns. the second one seems to be timecourese but I am not quite sure it is correct or not. and also I dont know what is the first column. will you tell me about the output ? thank you very much. YUMI > You have specified two segmentations (an annotation and a segmentation). > Just use one (probably the annot). There will be a column for each label > in the annot. Use the --ctab-out to get a color table that indicates > which column belongs to which region. > doug > > YUMI MAEDA wrote: >> HI, >> I am trying to get timecourse from each subject within a ROI >> with GUI as follows, >> in tksurfer GUI, >> Tools > timecourse > Write summary of marked vetices/label, >> >> I would like to do it command line, would you tell me what line I can >> use? >> >> I tried to use mri_segstats >> --i ./filtered_func_data.nii --subject subj1 --sum ./test_summary >> --avgwf >> test_output --annot subj1 aparc lh --seg ./testaseg-in-func.img >> >> the output has 7 columns and does not seems to be timecourse and also it >> is different from the one that I get when I use GUI as I described >> above. >> >> thank you very much. >> YUMI >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
