You have specified two segmentations (an annotation and a segmentation). Just use one (probably the annot). There will be a column for each label in the annot. Use the --ctab-out to get a color table that indicates which column belongs to which region. doug
YUMI MAEDA wrote: > HI, > I am trying to get timecourse from each subject within a ROI > with GUI as follows, > in tksurfer GUI, > Tools > timecourse > Write summary of marked vetices/label, > > I would like to do it command line, would you tell me what line I can use? > > I tried to use mri_segstats > --i ./filtered_func_data.nii --subject subj1 --sum ./test_summary --avgwf > test_output --annot subj1 aparc lh --seg ./testaseg-in-func.img > > the output has 7 columns and does not seems to be timecourse and also it > is different from the one that I get when I use GUI as I described above. > > thank you very much. > YUMI > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
