Hi Sandra, it is usually just a matter of setting up a design matrix and 
contrast matrices to test what you are interested in then using any glm 
software. If you just have two time points, then you can just subtract 
them and do a one-sample group mean (design matrix a column of all ones; 
contrast matrix = [1]).

doug

swood...@nmr.mgh.harvard.edu wrote:
> Hello all,
>
> We would like to analyise our repeated measures DTI data using an ANOVA. 
> We are wondering if someone might have experience running AVOVA's on 3D
> data?  Is there a particular tool used or did you use MATLAB for this type
> of analysis?
>
>
> Thank you,
>
> Sandra
>
>
> Sandra Woodman
> Mood and Motor Control Laboratory
> Athinoula Martinos Center for Biomedical Imaging
> Massachusetts General Hospital
>
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>
>
>   

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
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