this page has some notes on a particular tksurfer problem: https://surfer.nmr.mgh.harvard.edu/fswiki/TksurferDisplayProblems
not sure if this is what you are encountering. n. On Mon, 2011-07-11 at 15:41 -0400, Bruce Fischl wrote: > Hi Antonella, > > usually we run everything then go back and check. I'll leave 1) for Nick > and Krish. > > cheers > Bruce > On Mon, 11 Jul 2011, Antonella Kis wrote: > > > > > Hi Bruce, > > > > I > > > > > > 1). My LNX3 the only one which is working is a Fedora Linux, Kernel Linux > > 2.6.32.23-170.fc12.x86_64, GENOME 2.28.2 > > LNX2 where I get the weird surface display is a Linux CENTOS x86_64, GENOME > > 2.16.0 > > > > The Analyst computer where I got the multiple frames error is a Linux, > > Kernel Linux 2.6.35.13-91.fc14.x86_64, GENOME 2.32.0 > > > > > > 2). Also, when I am doing my data analysis after running the recon -all and > > qcache -all for my subjects, what is the best steps order to be followed. > > While reading the > > FreeSurfer Troubleshooting Reconstruction Work suggests the user to run > > all these steps at once before beginning to inspect the data since this > > allows the user to see the > > final complete output before deciding on any interventions.But this steps > > are in a different order that the one in the tutorial and also in a > > different order that the one > > described in the attached document. > > > > 8. Check the segmentations > > - After editing the wm.mgz volume run the following steps: > > -normalization -maskbfs -segmentation -autorecon2-wm -autorecon3. > > > > > > > > > > > > > > > > Thank you for your help! > > Antonella > > > > > > > > > _______________________________________________ Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
